VMD CITATION SOFTWARE
VMD CITATION CODE

The preferred way to cite VMD software is: The current version for Windows, Linux and MacOSX operating systems can be downloaded from this link. VMD is distributed as a free software under the terms of the GPL. SIGMA, NAMD)Interactive MD and VR Device Support Making Movies with VMD Using VMD as a Web/MIME helper Application.VMD can be used to concurrently display and interact with a running NAMD simulation.VMD works well with projected display systems like the 3-D Projection Facility maintained by the Theoretical and Computational Biophysics Group.Integration with the program NAMD, a fast, parallel, and scalable MD program developed in conjunction with VMD in the Theoretical and Computational Biophysics Group at the University of Illinois.

VMD CITATION CODE

Modular, extensible source code using an object-oriented design in C++, with a programmers guide describing the program architecture and source code.

Extensions to the Tcl language which enable researchers to write their own routines for molecular analysis.User-extensible graphical and text-based user interfaces, built-on standard Tcl/Tk and Python scripting languages.Ability to export displayed graphics to files which may be processed by a number of popular ray tracing and image rendering packages, including POV-Ray, Rayshade, Raster3D, and Tachyon.

VMD includes a multiple sequence alignment plugin, a unified bioinformatics analysis environment that allows one to organize, display, and analyze both sequence and structure data for proteins and nucleic acids.

In this study, the parameter K of KNN is selected by IBPSO. Thus, the features of the BVS based on VMD-PSR-SVD can be described as.

Support for over 60 molecular file formats and data types through an extensive library of built-in file reader/writer plugins and translators Here, (embedding space dimension) is set to 5, and (time delay) is set to 3 it is obvious that is less than.

Extensive atom selection syntax for choosing subsets of atoms for display (includes boolean operators, regular expressions, and more).

Many molecular rendering and coloring methods.

No limits on the number of molecules, atoms, residues or number of trajectory frames, except available memory.

Many excellent VMD tutorials developed locally, and by the research community at large.

Support for GPU accelerated computation.

Support for all major computer platforms.

Screenshot of 1.8.3 version of VMD software.

Vmd citation